CelLink.model.Cellink.visualize_integration

static Cellink.visualize_integration(ann1_full_batch, ann2_full_batch, arr2_imputed, datatype, matched_cellids, direction=1, loc='upper right')

Joint embed the arr and arr_imputed from alignment. Visualize the joint embedding results. This is done batch-to-batch

Parameters:

arr1: np.array

the original value of arr1

arr2_imputed: np.array

the imputed features of arr2 from arr1

datatype: list

the data type of arr and arr2_imputed

direction: int,

If direction = 1, jointly embed arr1 and arr2_imputed. If direction = 2, jointly embed arr2 and arr1_imputed.

loc: str,

The position of the legend in the figure. Its values can be “upper left”, “upper right”, “bottom left”, “bottom right”.