API documentation

This document provides a comprehensive API specification for the CelLink package, detailing all available public functions and classes.

CelLink.metrics

Evaluation metrics for alignment quality, imputation accuracy, and graph connectivity.

CelLink.model

Core Cellink class and algorithms for multimodal cell alignment, transport, and feature imputation.

CelLink.utils

Small helper utilities for preprocessing, graph smoothing, and distance computations used by CelLink.