CelLink.metrics.average_sihouette_width

CelLink.metrics.average_sihouette_width(embedding, cell_type_label)[source]

Calculate the average silhouette score of integration performance.

Parameters:

embedding (np.ndarray of shape (n_samples, n_dims)) – The 2D (or low-dim) embedding array used for silhouette calculation.
cell_type_label (array-like of shape (n_samples,)) – The cell type labels corresponding to each embedding point.

Returns:

float – The average silhouette score (rounded to 4 decimals).